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Dennis Shasha

Papers on DiSC'04


Warping Indexes with Envelope Transforms for Query by Humming

Query by Humming - in Action with its Technology Revealed

The Virtues and Challenges of Ad Hoc + Streams Querying in Finance

Activist data mining for computational science: tools and applications

Efficient elastic burst detection in data streams

Efficient Elastic Burst Detection in Data Streams

TreeRank: A Similarity Measure for Nearest Neighbor Searching in Phylogenetic Databases

AQuery: Query Language for Ordered Data, Optimization Techniques, and Experiments

Publications


Note: Links lead to the DBLP on the Web.

Dennis Shasha

Dennis Shasha, Jason Tsong-Li Wang , Sen Zhang : Unordered Tree Mining with Applications to Phylogeny. ICDE 2004 : 708-719

Dennis Shasha: Editorial. Inf. Syst. 29 (3): 205 (2004)

C. Di Pietro , V. Di Pietro , G. Emmanuele , Alfredo Ferro , T. Maugeri , E. Modica , G. Pigola , Alfredo Pulvirenti , M. Purrello , M. Ragusa , M. Scalia , Dennis Shasha, S. Travali , V. Zimmitti : ANTICLUSTAL: Multiple Sequence Alignment by Antipole Clustering and Linear Approximate 1-Median Computation. CSB 2003 : 326-336

Yunyue Zhu , Dennis Shasha: Efficient elastic burst detection in data streams. KDD 2003 : 336-345

Dennis Shasha: Database Tuning: Principles, Experiments, and Guidance. SBBD 2003 : 1

Dennis Shasha: Activist Data Mining for Computational Science: Tools and Applications. SBBD 2003 : 6-10

Yunyue Zhu , Dennis Shasha: Warping Indexes with Envelope Transforms for Query by Humming. SIGMOD Conference 2003 : 181-192

Yunyue Zhu , Dennis Shasha, Xiaojian Zhao : Query by Humming - in Action with its Technology Revealed. SIGMOD Conference 2003 : 675

Jason Tsong-Li Wang , Huiyuan Shan , Dennis Shasha, William H. Piel : TreeRank: A Similarity Measure for Nearest Neighbor Searching in Phylogenetic Databases. SSDBM 2003 : 171-

Alberto Lerner , Dennis Shasha: AQuery: Query Language for Ordered Data, Optimization Techniques, and Experiments. VLDB 2003 : 345-356

Alberto Lerner , Dennis Shasha: The Virtues and Challenges of Ad Hoc + Streams Querying in Finance. IEEE Data Eng. Bull. 26 (1): 49-56 (2003)

Alfredo Ferro , G. Pigola , Alfredo Pulvirenti , Dennis Shasha: Fast Clustering and Minimum Weight Matching Algorithms for Very Large Mobile Backbone Wireless Networks. Int. J. Found. Comput. Sci. 14 (2): 223-236 (2003)

David Mazières , Dennis Shasha: Building secure file systems out of byantine storage. PODC 2002 : 108-117

Dennis Shasha, Jason Tsong-Li Wang , Rosalba Giugno : Algorithmics and Applications of Tree and Graph Searching. PODS 2002 : 39-52

Dennis Shasha, Philippe Bonnet : Database tuning: principles, experiments, and troubleshooting techniques (part I). SIGMOD Conference 2002 : 637

Dennis Shasha, Philippe Bonnet : Database tuning: principles, experiments, and troubleshooting techniques (part II). SIGMOD Conference 2002 : 637

Huiyuan Shan , Katherine G. Herbert , William H. Piel , Dennis Shasha, Jason Tsong-Li Wang : A Structure-Based Search Engine for Phylogenetic Databases. SSDBM 2002 : 7-10

Dennis Shasha, Jason Tsong-Li Wang , Huiyuan Shan , Kaizhong Zhang : ATreeGrep: Approximate Searching in Unordered Trees. SSDBM 2002 : 89-98

Dennis Shasha, Philippe Bonnet : Database Tuning: Principles, Experiments, and Troubleshooting Techniques. VLDB 2002

Yunyue Zhu , Dennis Shasha: StatStream: Statistical Monitoring of Thousands of Data Streams in Real Time. VLDB 2002 : 358-369

Xiong Wang , Jason Tsong-Li Wang , Dennis Shasha, Bruce A. Shapiro , Isidore Rigoutsos , Kaizhong Zhang : Finding Patterns in Three-Dimensional Graphs: Algorithms and Applications to Scientific Data Mining. IEEE Trans. Knowl. Data Eng. 14 (4): 731-749 (2002)

Jason Tsong-Li Wang , Kaizhong Zhang , George Jyh-Shian Chang , Dennis Shasha: Finding approximate patterns in undirected acyclic graphs. Pattern Recognition 35 (2): 473-483 (2002)

Helena Galhardas , Daniela Florescu , Dennis Shasha, Eric Simon , Cristian-Augustin Saita : Improving Data Cleaning Quality Using a Data Lineage Facility. DMDW 2001 : 3

Françoise Fabret , Hans-Arno Jacobsen , François Llirbat , João Pereira , Kenneth A. Ross , Dennis Shasha: Filtering Algorithms and Implementation for Very Fast Publish/Subscribe. SIGMOD Conference 2001

Arthur T. Whitney , Dennis Shasha: Lots o' Ticks: Real-Time High Performance Time Series Queries on Billions of Trades and Quotes. SIGMOD Conference 2001

Helena Galhardas , Daniela Florescu , Dennis Shasha, Eric Simon , Cristian-Augustin Saita : Declarative Data Cleaning: Language, Model, and Algorithms. VLDB 2001 : 371-380

João Pereira , Françoise Fabret , Hans-Arno Jacobsen , François Llirbat , Dennis Shasha: WebFilter: A High-throughput XML-based Publish and Subscribe System. VLDB 2001 : 723-724

Jason Tsong-Li Wang , Qicheng Ma , Dennis Shasha, Cathy H. Wu : New techniques for extracting features from protein sequences. IBM Systems Journal 40 (2): 426-441 (2001)

Qicheng Ma , Jason Tsong-Li Wang , Dennis Shasha, Cathy H. Wu : DNA sequence classification via an expectation maximization algorithm and neural networks: a case study. IEEE Transactions on Systems, Man, and Cybernetics, Part C 31 (4): 468-475 (2001)

Munir Cochinwala , Verghese Kurien , Gail Lalk , Dennis Shasha: Efficient data reconciliation. Inf. Sci. 137 (1-4): 1-15 (2001)

João Pereira , Françoise Fabret , François Llirbat , Dennis Shasha: Efficient Matching for Web-Based Publish/Subscribe Systems. CoopIS 2000 : 162-173

Marc Donner , David Nochin , Dennis Shasha, Wendy Walasek : Algorithms and Experience in Increasing the Intelligibility and Hygiene of Access Control in Large Organizations. DBSec 2000 : 195-316

Helena Galhardas , Daniela Florescu , Dennis Shasha, Eric Simon : An Extensible Framework for Data Cleaning. ICDE 2000 : 312

Jason Tsong-Li Wang , Qicheng Ma , Dennis Shasha, Cathy H. Wu : Application of neural networks to biological data mining: a case study in protein sequence classification. KDD 2000 : 305-309

Jason Tsong-Li Wang , Xiong Wang , Dennis Shasha, Bruce A. Shapiro , Kaizhong Zhang , Xinhuan Zheng , Qicheng Ma , Zasha Weinberg : An Approximate Search Engine for Structural Databases. SIGMOD Conference 2000 : 584

Helena Galhardas , Daniela Florescu , Dennis Shasha, Eric Simon : AJAX: An Extensible Data Cleaning Tool SIGMOD Conference 2000 : 590

João Pereira , Françoise Fabret , François Llirbat , Radu Preotiuc-Pietro , Kenneth A. Ross , Dennis Shasha: Publish/Subscribe on the Web at Extreme Speed. VLDB 2000 : 627-630

Matthias Jarke , Dennis Shasha: Message from the Editors-in-Chief. Inf. Syst. 25 (6-7): 393 (2000)

Xiong Wang , Jason Tsong-Li Wang , King-Ip Lin , Dennis Shasha, Bruce A. Shapiro , Kaizhong Zhang : An Index Structure for Data Mining and Clustering. Knowl. Inf. Syst. 2 (2): 161-184 (2000)

Jason Tsong-Li Wang , Bruce A. Shapiro , Dennis Shasha: Pattern Discovery in Biomolecular Data: Tools, Techniques and Applications Oxford University Press 1999

David Tanzer , Dennis Shasha: Queryable Acyclic Production Systems. CIKM 1999 : 284-291

Jason Tsong-Li Wang , Xiong Wang , King-Ip Lin , Dennis Shasha, Bruce A. Shapiro , Kaizhong Zhang : Evaluating a Class of Distance-Mapping Algorithms for Data Mining and Clustering. KDD 1999 : 307-311

Bin Li , Dennis Shasha, Jason Tsong-Li Wang : A Framework for Biological Pattern Discovery on Networks of Workstations. Pattern Discovery in Biomolecular Data 1999 : 133-144

Jason Tsong-Li Wang , Thomas G. Marr , Steve Rozen , Dennis Shasha: Pattern Discovery and Classification in Biosequences. Pattern Discovery in Biomolecular Data 1999 : 55-74

Dennis Shasha: Review - Efficient Locking for Concurrent Operations on B-Trees. ACM SIGMOD Digital Review 1 : (1999)

Dennis Shasha: Review - Join Synopses for Approximate Query Answering. ACM SIGMOD Digital Review 1 : (1999)

Dennis Shasha: Review - On Random Sampling over Joins. ACM SIGMOD Digital Review 1 : (1999)

Dennis Shasha: Review - Ripple Joins for Online Aggregation. ACM SIGMOD Digital Review 1 : (1999)

Dennis Shasha: Review - WALRUS: A Similarity Retrieval Algorithm for Image Databases. ACM SIGMOD Digital Review 1 : (1999)

Dennis Shasha: Tuning Time Series Queries in Finance: Case Studies and Recommendations. IEEE Data Eng. Bull. 22 (2): 40-46 (1999)

Theodore Johnson , Dennis Shasha: Some Approaches to Index Design for Cude Forests. IEEE Data Eng. Bull. 22 (4): 22-30 (1999)

Jason Tsong-Li Wang , Steve Rozen , Bruce A. Shapiro , Dennis Shasha, Zhiyuan Wang , Maisheng Yin : New Techniques for DNA Sequence Classification. Journal of Computational Biology 6 (2): 209-218 (1999)

Kaippallimalil J. Jacob , Dennis Shasha: FinTime - A Financial Time Series Benchmark. SIGMOD Record 28 (4): 42-48 (1999)

Cathy A. Lazere , Dennis Shasha: Out of Their Minds: The Lives and Discoveries of 15 Great Computer Scientists. Copernicus Books, an imprint of Springer-Verlag 1998

Yanling Yang , Kaizhong Zhang , Xiong Wang , Jason Tsong-Li Wang , Dennis Shasha: An Approximate Oracle for Distance in Metric Spaces. CPM 1998 : 104-117

Bin Li , Dennis Shasha: Free Parallel Data Mining. SIGMOD Conference 1998 : 541-543

Jason Tsong-Li Wang , Bruce A. Shapiro , Dennis Shasha, Kaizhong Zhang , Kathleen M. Currey : An Algorithm for Finding the Largest Approximately Common Substructures of Two Trees. IEEE Transactions on Pattern Analysis and Machine Intelligence 20 (8): 889-895 (1998)

Karpjoo Jeong , Dennis Shasha, Surendranath Talla , Peter Wyckof : An Approach to Fault-Tolerant Parallel Processing on Intermittently Idle, Heterogeneous Workstations. FTCS 1997 : 11-20

Xiong Wang , Jason Tsong-Li Wang , Dennis Shasha, Bruce A. Shapiro , Sitaram Dikshitulu , Isidore Rigoutsos , Kaizhong Zhang : Automated Discovery of Active Motifs in Three Dimensional Molecules. KDD 1997 : 89-95

Dennis Shasha: Lessons from Wall Street: Case Studies in Configuration, Tuning, and Distribution (Tutorial). SIGMOD Conference 1997 : 498-501

Jason Tsong-Li Wang , Dennis Shasha, George Jyh-Shian Chang , Liam Relihan , Kaizhong Zhang , Girish Patel : Structural Matching and Discovery in Document Databases. SIGMOD Conference 1997 : 560-563

Dennis Shasha: Tuning Database Design for High Performance. The Computer Science and Engineering Handbook 1997 : 995-1011

Theodore Johnson , Dennis Shasha: Some Approaches to Index Design for Cube Forest. IEEE Data Eng. Bull. 20 (1): 27-35 (1997)

Jason Tsong-Li Wang , Bruce A. Shapiro , Dennis Shasha, Kaizhong Zhang , Chia-Yo Chang : Automated Discovery of Active Motifs in Multiple RNA Secondary Structures. KDD 1996 : 70-75

Jim Gray , Pat Helland , Patrick E. O'Neil , Dennis Shasha: The Dangers of Replication and a Solution. SIGMOD Conference 1996 : 173-182

Peter Piatko , Roman Yangarber , Dao-I Lin , Dennis Shasha: Thinksheet: A Tool for Tailoring Complex Documents. SIGMOD Conference 1996 : 546

Dennis Shasha: Tuning Databases for High Performance. ACM Comput. Surv. 28 (1): 113-115 (1996)

Kaizhong Zhang , Jason Tsong-Li Wang , Dennis Shasha: On the Editing Distance Between Undirected Acyclic Graphs. Int. J. Found. Comput. Sci. 7 (1): 43-58 (1996)

Kaizhong Zhang , Jason Tsong-Li Wang , Dennis Shasha: On the Editing Distance between Undirected Acyclic Graphs and Related Problems. CPM 1995 : 395-407

Gilad Koren , Dennis Shasha: An Approach To Handling Overloaded Systems That Allow Skips. IEEE Real-Time Systems Symposium 1995 : 110-119

Jason Tsong-Li Wang , Kaizhong Zhang , Dennis Shasha: Pattern Matching and Pattern Discovery in Scientific, Program, and Document Databases. SIGMOD Conference 1995 : 487

Dennis Shasha, François Llirbat , Eric Simon , Patrick Valduriez : Transaction Chopping: Algorithms and Performance Studies ACM Trans. Database Syst. 20 (3): 325-363 (1995)

Gilad Koren , Dennis Shasha: D^over: An Optimal On-Line Scheduling Algorithm for Overloaded Uniprocessor Real-Time Systems. SIAM J. Comput. 24 (2): 318-339 (1995)

Catriel Beeri , Atsushi Ohori , Dennis Shasha: Database Programming Languages (DBPL-4), Proceedings of the Fourth International Workshop on Database Programming Languages - Object Models and Languages, Manhattan, New York City, USA, 30 August - 1 September 1993 Springer 1994

Jason Tsong-Li Wang , Gung-Wei Chirn , Thomas G. Marr , Bruce A. Shapiro , Dennis Shasha, Kaizhong Zhang : Combinatorial Pattern Discovery for Scientific Data: Some Preliminary Results. SIGMOD Conference 1994 : 115-125

Karpjoo Jeong , Dennis Shasha: PLinda 2.0: A Transactional/Checkpointing Approach to Fault Tolerant Linda. Symposium on Reliable Distributed Systems 1994 : 96-105

Theodore Johnson , Dennis Shasha: 2Q: A Low Overhead High Performance Buffer Management Replacement Algorithm. VLDB 1994 : 439-450

Jason Tsong-Li Wang , Kaizhong Zhang , Karpjoo Jeong , Dennis Shasha: A System for Approximate Tree Matching. IEEE Trans. Knowl. Data Eng. 6 (4): 559-571 (1994)

Dennis Shasha, Jason Tsong-Li Wang , Kaizhong Zhang , Frank Y. Shih : Exact and approximate algorithms for unordered tree matching. IEEE Transactions on Systems, Man, and Cybernetics 24 (4): 668-678 (1994)

Matthias Jarke , Dennis Shasha: Information Systems takes a new direction. Inf. Syst. 19 (1): 1 (1994)

Matthias Jarke , Dennis Shasha: The new Editorial Board of Information Systems . Inf. Syst. 19 (2): 117-120 (1994)

Kaizhong Zhang , Dennis Shasha, Jason Tsong-Li Wang : Approximate Tree Matching in the Presence of Variable Length Don't Cares. J. Algorithms 16 (1): 33-66 (1994)

Gilad Koren , Dennis Shasha: MOCA: A Multiprocessor On-Line Competitive Algorithm for Real-Time System Scheduling. Theor. Comput. Sci. 128 (1&2): 75-97 (1994)

Theodore Johnson , Dennis Shasha: The Performance of Current B-Tree Algorithms. ACM Trans. Database Syst. 18 (1): 51-101 (1993)

Theodore Johnson , Dennis Shasha: B-Trees with Inserts and Deletes: Why Free-at-Empty Is Better Than Merge-at-Half. J. Comput. Syst. Sci. 47 (1): 45-76 (1993)

Dennis Shasha: Database Tuning - A Principled Approach Prentice-Hall 1992

Kaizhong Zhang , Dennis Shasha, Jason Tsong-Li Wang : Fast Serial and Parallel Algorithms for Approximate Tree Matching with VLDC's. CPM 1992 : 151-161

Dennis Shasha, Jason Tsong-Li Wang , Kaizhong Zhang , Frank Yeong-Chyang Shih : Pattern Matching in Unordered Trees. ICTAI 1992 : 352-361

John Turek , Dennis Shasha, Sundeep Prakash : Locking without Blocking: Making Lock Based Concurrent Data Structure Algorithms Nonblocking. PODS 1992 : 212-222

Dennis Shasha, Eric Simon , Patrick Valduriez : Simple Rational Guidance for Chopping Up Transactions. SIGMOD Conference 1992 : 298-307

Dennis Shasha, Steve Rozen : Database Tuning. VLDB 1992 : 313

John Turek , Dennis Shasha: The Many Faces of Consensus in Distributed Systems. IEEE Computer 25 (6): 8-17 (1992)

Kaizhong Zhang , Richard Statman , Dennis Shasha: On the Editing Distance Between Unordered Labeled Trees. Inf. Process. Lett. 42 (3): 133-139 (1992)

Sanjoy K. Baruah , Gilad Koren , D. Mao , B. Mishra , Arvind Raghunathan , Louis E. Rosier , Dennis Shasha, Fuxing Wang : On the Competitiveness of On-Line Real-Time Task Scheduling. Real-Time Systems 4 (2): 125-144 (1992)

Dennis Shasha, John Turek : Promises versus assumptions in database fault tolerance. BDA 1991 : 349-

Steve Rozen , Dennis Shasha: Rationale and Design of BULK. DBPL 1991 : 71-85

Sanjoy K. Baruah , Gilad Koren , B. Mishra , Arvind Raghunathan , Louis E. Rosier , Dennis Shasha: On-line Scheduling in the Presence of Overload FOCS 1991 : 100-110

Rakesh Agrawal , S. Buroff , Narain H. Gehani , Dennis Shasha: Object Versioning in Ode. ICDE 1991 : 446-455

Brian G. Anderson , Dennis Shasha: Persistant Linda: Linda + Transactions + Query Processing. Research Directions in High-Level Parallel Programming Languages 1991 : 93-109

Steve Rozen , Dennis Shasha: A Framework for Automating Physical Database Design. VLDB 1991 : 401-411

Dennis Shasha, Jason Tsong-Li Wang : Optimizing Equijoin Queries In Distributed Databases Where Relations Are Hash Partitioned. ACM Trans. Database Syst. 16 (2): 279-308 (1991)

Susan H. Gray , C. Bradford Barber , Dennis Shasha: Information Search with Dynamic Text vs Paper Text: An Empirical Comparison. International Journal of Man-Machine Studies 35 (4): 575-586 (1991)

Theodore Johnson , Dennis Shasha: A Framework for the Performance Analysis of Concurrent B-tree Algorithms. PODS 1990 : 273-287

Jason Tsong-Li Wang , Dennis Shasha: Query Processing for Distance Metrics. VLDB 1990 : 602-613

Dennis Shasha, Jason Tsong-Li Wang : New Techniques for Best-Match Retrieval. ACM Trans. Inf. Syst. 8 (2): 140-158 (1990)

Merrill E. Isenman , Dennis Shasha: Performance and Architectural Issues for String Matching. IEEE Trans. Computers 39 (2): 238-250 (1990)

Dennis Shasha, Kaizhong Zhang : Fast Algorithms for the Unit Cost Editing Distance Between Trees. J. Algorithms 11 (4): 581-621 (1990)

Theodore Johnson , Dennis Shasha: Utilization of B-trees with Inserts, Deletes and Modifies. PODS 1989 : 235-246

Dennis Shasha, Kaizhong Zhang : Fast Parallel Algorithms for the Unit Cost Editing Distance Between Trees. SPAA 1989 : 117-126

Steve Rozen , Dennis Shasha: Using a Relational System On Wall Street: The Good, The Bad, The Ugly, And The Ideal. Commun. ACM 32 (8): 988-994 (1989)

Kaizhong Zhang , Dennis Shasha: Simple Fast Algorithms for the Editing Distance Between Trees and Related Problems. SIAM J. Comput. 18 (6): 1245-1262 (1989)

Vladimir Lanin , Dennis Shasha: Concurrent Set Manipulation without Locking. PODS 1988 : 211-220

Dennis Shasha, Nathan Goodman : Concurrent Search Structure Algorithms. ACM Trans. Database Syst. 13 (1): 53-90 (1988)

Dennis Shasha, Marc Snir : Efficient and Correct Execution of Parallel Programs that Share Memory. ACM Trans. Program. Lang. Syst. 10 (2): 282-312 (1988)

Dennis Shasha, Paul G. Spirakis : Fast Parallel Algorithms for Processing of Joins. ICS 1987 : 939-953

Dennis Shasha: When Does Non-Linear Text Help? Expert Database Conf. 1986 : 163-174

Vladimir Lanin , Dennis Shasha: A Symmetric Concurrent B-Tree Algorithm. FJCC 1986 : 380-389

Eliezer Kantorowitz , Fred J. Maryanski , Dennis Shasha: Distributed Office By Example (D-OBE). ICDE 1986 : 166-174

Nathan Goodman , Dennis Shasha: Semantically-based Concurrency Control for Search Structures. PODS 1985 : 8-19

Dennis Shasha: NetBook - a Data Model to Support Knowledge Exploration. VLDB 1985 : 418-425

Dennis Shasha: What Good are Concurrent Search Structure Algorithms for databases Anyway? IEEE Database Eng. Bull. 8 (2): 84-90 (1985)

Dennis Shasha, Amir Pnueli , W. Ewald : Temporal Verification of Carrier-Sense Local Area Network Protocols. POPL 1984 : 54-65

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