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Cathy H. Wu

Papers on DiSC'04


BIO-AJAX: An Extensible Framework for Biological Data Cleaning

Publications


Note: Links lead to the DBLP on the Web.

Cathy H. Wu

Cathy H. Wu, Hongzhan Huang , Anastasia Nikolskaya , Zhangzhi Hu , Winona C. Barker : The iProClass integrated database for protein functional analysis. Computational Biology and Chemistry 28 (1): 87-96 (2004)

Zhang-Zhi Hu , Inderjeet Mani , Vincent Hermoso , Hongfang Liu , Cathy H. Wu: iProLINK: an integrated protein resource for literature mining. Computational Biology and Chemistry 28 (5-6): 409-416 (2004)

Cathy H. Wu, Anastasia N. Nikolskaya , Hongzhan Huang , Lai-Su L. Yeh , Darren A. Natale , C. R. Vinayaka , Zhangzhi Hu , Raja Mazumder , Sandeep Kumar , Panagiotis Kourtesis , Robert S. Ledley , Baris E. Suzek , Leslie Arminski , Yongxing Chen , Jian Zhang , Jorge Louie Cardenas , Sehee Chung , Jorge Castro-Alvear , Georgi Dinkov , Winona C. Barker : PIRSF: family classification system at the Protein Information Resource. Nucleic Acids Research 32 (Database-Issue): 112-114 (2004)

Rolf Apweiler , Amos Bairoch , Cathy H. Wu, Winona C. Barker , Brigitte Boeckmann , Serenella Ferro , Elisabeth Gasteiger , Hongzhan Huang , Rodrigo Lopez , Michele Magrane , Maria Jesus Martin , Darren A. Natale , Claire O'Donovan , Nicole Redaschi , Lai-Su L. Yeh : UniProt: the Universal Protein knowledgebase. Nucleic Acids Research 32 (Database-Issue): 115-119 (2004)

Katherine G. Herbert , Narain H. Gehani , William H. Piel , Jason Tsong-Li Wang , Cathy H. Wu: BIO-AJAX: An Extensible Framework for Biological Data Cleaning. SIGMOD Record 33 (2): 51-57 (2004)

Jason Tsong-Li Wang , Cathy H. Wu, Paul P. Wang : Computational Biology and Genome Informatics World Scientific 2003

Cathy H. Wu: The Protein Information Resource for Functional Genomics and Proteomics. Computational Biology and Genome Informatics 2003 : 117-137

Cathy H. Wu, Hongzhan Huang , Lai-Su L. Yeh , Winona C. Barker : Protein family classification and functional annotation. Computational Biology and Chemistry 27 (1): 37-47 (2003)

Cathy H. Wu, Lai-Su L. Yeh , Hongzhan Huang , Leslie Arminski , Jorge Castro-Alvear , Yongxing Chen , Zhangzhi Hu , Panagiotis Kourtesis , Robert S. Ledley , Baris E. Suzek , C. R. Vinayaka , Jian Zhang , Winona C. Barker : The Protein Information Resource. Nucleic Acids Research 31 (1): 345-347 (2003)

Hongzhan Huang , Winona C. Barker , Yongxing Chen , Cathy H. Wu: iProClass: an integrated database of protein family, function and structure information. Nucleic Acids Research 31 (1): 390-392 (2003)

Lynette Hirschman , Jong C. Park , Jun-ichi Tsujii , Cathy H. Wu, Limsoon Wong : Literature Data Mining for Biology - Session Introduction. Pacific Symposium on Biocomputing 2002 : 323-325

Lynette Hirschman , Jong C. Park , Jun-ichi Tsujii , Limsoon Wong , Cathy H. Wu: Accomplishments and challenges in literature data mining for biology. Bioinformatics 18 (12): 1553-1561 (2002)

Cathy H. Wu, Hongzhan Huang , Leslie Arminski , Jorge Castro-Alvear , Yongxing Chen , Zhangzhi Hu , Robert S. Ledley , Kali C. Lewis , Hans-Werner Mewes , Bruce C. Orcutt , Baris E. Suzek , Akira Tsugita , C. R. Vinayaka , Lai-Su L. Yeh , Jian Zhang , Winona C. Barker : The Protein Information Resource: an integrated public resource of functional annotation of proteins. Nucleic Acids Research 30 (1): 35-37 (2002)

Jason Tsong-Li Wang , Qicheng Ma , Dennis Shasha , Cathy H. Wu: New techniques for extracting features from protein sequences. IBM Systems Journal 40 (2): 426-441 (2001)

Qicheng Ma , Jason Tsong-Li Wang , Dennis Shasha , Cathy H. Wu: DNA sequence classification via an expectation maximization algorithm and neural networks: a case study. IEEE Transactions on Systems, Man, and Cybernetics, Part C 31 (4): 468-475 (2001)

Winona C. Barker , John S. Garavelli , Zhenglin Hou , Hongzhan Huang , Robert S. Ledley , Peter B. McGarvey , Hans-Werner Mewes , Bruce C. Orcutt , Friedhelm Pfeiffer , Akira Tsugita , C. R. Vinayaka , Chunlin Xiao , Lai-Su L. Yeh , Cathy H. Wu: Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Research 29 (1): 29-32 (2001)

Cathy H. Wu, Chunlin Xiao , Zhenglin Hou , Hongzhan Huang , Winona C. Barker : iProClass: an integrated, comprehensive and annotated protein classification database. Nucleic Acids Research 29 (1): 52-54 (2001)

Jason Tsong-Li Wang , Qicheng Ma , Dennis Shasha , Cathy H. Wu: Application of neural networks to biological data mining: a case study in protein sequence classification. KDD 2000 : 305-309

Peter B. McGarvey , Hongzhan Huang , Winona C. Barker , Bruce C. Orcutt , John S. Garavelli , Geetha Y. Srinivasarao , Lai-Su L. Yeh , Chunlin Xiao , Cathy H. Wu: PIR: a new resource for bioinformatics. Bioinformatics 16 (3): 290-291 (2000)

Hongzhan Huang , Chunlin Xiao , Cathy H. Wu: ProClass protein family database. Nucleic Acids Research 28 (1): 273-276 (2000)

Winona C. Barker , John S. Garavelli , Hongzhan Huang , Peter B. McGarvey , Bruce C. Orcutt , Geetha Y. Srinivasarao , Chunlin Xiao , Lai-Su L. Yeh , Robert S. Ledley , Joseph F. Janda , Friedhelm Pfeiffer , Hans-Werner Mewes , Akira Tsugita , Cathy H. Wu: The Protein Information Resource (PIR). Nucleic Acids Research 28 (1): 41-44 (2000)

Cathy H. Wu, Hongzhan Huang , Jerry McLarty : Gene Family Identification Network Design for Protein Sequence Analysis. International Journal on Artificial Intelligence Tools 8 (4): 419-432 (1999)

Cathy H. Wu, Sailaja Shivakumar , Hongzhan Huang : ProClass Protein Family Database. Nucleic Acids Research 27 (1): 272-274 (1999)

Winona C. Barker , John S. Garavelli , Peter B. McGarvey , Christopher R. Marzec , Bruce C. Orcutt , Geetha Y. Srinivasarao , Lai-Su L. Yeh , Robert S. Ledley , Hans-Werner Mewes , Friedhelm Pfeiffer , Akira Tsugita , Cathy H. Wu: The PIR-International Protein Sequence Database. Nucleic Acids Research 27 (1): 39-43 (1999)

Cathy H. Wu, Hsi-Lien Chen , Sheng-Chih Chen : Counter-Propagation Neural Networks for Molecular Sequence Classification: Supervised LVQ and Dynamic Node Allocation. Appl. Intell. 7 (1): 27-38 (1997)

Cathy H. Wu: Artificial Neural Networks for Molecular Sequence Analysis. Computers & Chemistry 21 (4): 237-255 (1997)

Cathy H. Wu, S. Zhao , H.-L. Chen , C. J. Lo , Jerry McLarty : Motif identification neural design for rapid and sensitive protein family search. Computer Applications in the Biosciences 12 (2): 109-118 (1996)

Cathy H. Wu, Michael W. Berry , Sailaja Shivakumar : Neural Networks for Full-Scale Protein Sequence Classification: Sequence Encoding with Singular Value Decomposition. Machine Learning 21 (1-2): 177-193 (1995)

Cathy H. Wu, Michael W. Berry , Yuk-Shing Fung , Jerry McLarty : Neural Networks for Molecular Sequence Classification. ISMB 1993 : 429-437

Cathy H. Wu: Classification Neural Networks for Rapid Sequence Annotation and Automated Database Organization. Computers & Chemistry 17 (2): 219-227 (1993)

Cathy H. Wu, George M. Whitson , Chun-Tse Hsiao , Cheng-Fu Huang : Classification Artificial Neural Systems for Genome Research. SC 1992 : 797-803

Cathy H. Wu, Tzx-Chung Chang : Protein Classification Using a Neural Network Database System. Conference on Analysis of Neural Network Applications 1991 : 29-41

Cathy H. Wu, George M. Whitson : Artificial Neural System for Gene Classification Using a Domain Database. ACM Conference on Computer Science 1990 : 288-292

George M. Whitson , Cathy H. Wu, Pam Taylor : Using an Artificial Neural System to Determine the Knowledge Base of an Expert System. SIGSMALL/PC Symposium 1990 : 268-270

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